
genewise output
Score 18.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000146_2.0  180 VKPVEYSQMYSYSY                                    
                     VK ++Y  +YS SY                                    
                     VKIIQYKHLYSISY                                    
gi|432086234|gb47139 gaaactacctaatt                                    
                     tattaaaatagtca                                    
                     aaaaacacacctcc                                    


//
>gi|432086234|gb|KB116655.1|:subseq(4264453,100155).pep
VKIIQYKHLYSISY
//
>gi|432086234|gb|KB116655.1|:subseq(4264453,100155).[47139:47180].sp
GTAAAAATAATACAATACAAACACCTATACAGCATTTCCTAC
//
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	match	47139	47180	18.68	+	.	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	cds	47139	47180	0.00	+	0	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
//

genewise output
Score 526.85 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000146_2.0   40 LTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP              
                     L+ IPAGYCFVEFADLATAEKCLHKINGKPLPGATP              
                     LSRIPAGYCFVEFADLATAEKCLHKINGKPLPGATP              
gi|432086234|g-50122 ctaacggtttggtggtgaggattcaaagacccggac              
                     tcgtccgagttatcatcccaagtaatagactcgccc              
                     tcgcattcttaatatgcacggtgtattgactaacat              


SPP00000146_2.0   76                        AKRFKLNYATYGKQPDN          
                                            AKRFKLNYATYGKQPDN          
                                            AKRFKLNYATYGKQPDN          
gi|432086234|g-50014 GTAAGGA  Intron 1   CAGgactacatgatgaccga          
                     <0-----[50014:49398]-0>cagtataaccagaacaa          
                                            aattagcttttgaaatc          


SPP00000146_2.0   93                           PEYSLFVGDLTPDVDDGMLYEFF 
                                               PEYSLFVGDLTPDVDDGMLYEFF 
                                S:S[agc]       PEYSLFVGDLTPDVDDGMLYEFF 
gi|432086234|g-49346 AGGTAAGTA  Intron 2   CAGCcgttctgggcacgggggactgtt 
                       <2-----[49344:47593]-2> caactttgatccataagttaatt 
                                               tgccctggcgcacgtccggtact 


SPP00000146_2.0  117 VKVYPSCRGGKVVLDQTGVS                          GYG 
                     VKVYPSCRGGKVVLDQTGVS                          GYG 
                     VKVYPSCRGGKVVLDQTGVS           K:K[aag]       GYG 
gi|432086234|g-47522 gagtcttcggaggtgcaggtAAGTAAGGC  Intron 3   CAGGgtg 
                     tataccggggatttaacgtc  <2-----[47460:46476]-2> gag 
                     cacccccgacggtgcgacgt                          ctt 


SPP00000146_2.0  141 FVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK              
                     FVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK              
                     FVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK              
gi|432086234|g-46465 tgataggcgcacgcagtcggggcgtacgccaggaca              
                     ttatcaataaagctcagagctgtgcactgtgtctca              
                     tggcatagaggacgagcgaaaagataagggtgacta              


SPP00000146_2.0  177                           SRVKPVEYSQMYSYSYNQYYQQY 
                                               SRVKPVEYSQMYSYSYNQYYQQY 
                                A:A[gct]       SRVKPVEYSQMYSYSYNQYYQQY 
gi|432086234|g-46357 GCGTGAGTC  Intron 4   CAGTacgacggtacatatatacttcct 
                       <2-----[46355:43385]-2> ggtactaagatagagaaaaaaaa 
                                               ttggcgattggctccccgtcggc 


SPP00000146_2.0  201 QNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ                   
                     QNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ                   
                     QNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ                   
gi|432086234|g-43314 cattgctgtgcaagatatatcctgtacaaac                   
                     aaaacaggaaaacggagagacaagacagcta                   
                     gccttggctcgtaccccctccgtctcgccgg                   


SPP00000146_2.0  232                        TYEEVGDDALE                
                                            TYEEVGDDALE                
                                            TYEEVGDDALE                
gi|432086234|g-43221 GTAACCA  Intron 5   CAGatgggggggtg                
                     <0-----[43221:42757]-0>caaatgaacta                
                                            ataatatttga                


SPP00000146_2.0  243                           PMPQLDVTEANKEFMEQSEELYD 
                                               PMPQLDVTEANKEFMEQSEELYD 
                               D:D[gac]        PMPQLDVTEANKEFMEQSEELYD 
gi|432086234|g-42723 GGTAAGAA  Intron 6   CAGACcacccggaggaagtagcaggctg 
                      <1-----[42722:37692]-1>  ctcatatcacaaattaagaataa 
                                               cgaggtgtgccggcgggtgggtt 


SPP00000146_2.0  267 ALMDCHWQPLDTVSSEIPAMM                             
                     ALMDCHWQPLDTVSSEIPA+M                             
                     ALMDCHWQPLDTVSSEIPAVM                             
gi|432086234|g-37620 gcagtctcccgagttgacgga                             
                     cttagagactactccatcctt                             
                     aggttcggcgcagtagcttgg                             


//
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a A in phase 2 intron
Making a D in phase 1 intron
>gi|432086234|gb|KB116655.1|:subseq(4264453,100155).pep
LSRIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLF
VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG
AVGLGSKPVRLSVAIPKASRVKPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYS
YPQYGYTQSTMQTYEEVGDDALEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTV
SSEIPAVM
//
>gi|432086234|gb|KB116655.1|:subseq(4264453,100155).[50122:37556].sp
CTTTCCAGGATCCCAGCTGGTTACTGTTTTGTAGAATTTGCAGATTTGGCCACAGCCGAG
AAGTGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCAAAACGTTTT
AAACTGAACTATGCTACTTATGGGAAACAACCAGATAACAGCCCTGAGTACTCCCTCTTT
GTGGGGGACCTGACCCCAGACGTGGATGACGGCATGCTGTATGAATTCTTTGTCAAAGTC
TACCCCTCCTGCCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGCTAT
GGTTTTGTGAAGTTCACAGATGAACTGGAACAGAAGCGAGCCCTGACAGAGTGCCAGGGA
GCAGTAGGACTGGGATCTAAACCAGTGCGGCTGAGTGTGGCAATCCCTAAAGCTAGTCGT
GTGAAGCCCGTGGAATATAGTCAGATGTACAGTTACAGCTACAACCAGTATTACCAGCAG
TACCAGAACTACTATGCTCAGTGGGGCTATGACCAGAATACAGGCAGCTACAGCTACAGT
TACCCCCAGTATGGCTATACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGAT
GCTTTGGAAGACCCCATGCCACAGCTGGATGTGACTGAGGCCAACAAGGAGTTCATGGAG
CAGAGTGAGGAGCTGTATGATGCACTGATGGATTGTCACTGGCAGCCCCTGGACACAGTG
TCTTCAGAGATCCCTGCTGTGATG
//
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	match	50122	37558	526.85	-	.	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	cds	50122	50015	0.00	-	0	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	intron	50014	49398	0.00	-	.	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	cds	49397	49345	0.00	-	0	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	intron	49344	47593	0.00	-	.	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	cds	47592	47461	0.00	-	1	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	intron	47460	46476	0.00	-	.	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	cds	46475	46356	0.00	-	1	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	intron	46355	43385	0.00	-	.	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	cds	43384	43222	0.00	-	1	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	intron	43221	42757	0.00	-	.	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	cds	42756	42723	0.00	-	0	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	intron	42722	37692	0.00	-	.	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
gi|432086234|gb|KB116655.1|:subseq(4264453,100155)	GeneWise	cds	37691	37558	0.00	-	2	gi|432086234|gb|KB116655.1|:subseq(4264453,100155)-genewise-prediction-1
//
